Package: ifCNVR 0.1.0
ifCNVR: Isolation-Forest Based 'CNV' Detection from 'NGS' Data
Automatically detects Copy Number Variations (CNV) from Next Generation Sequencing data using a machine learning algorithm, Isolation forest. More details about the method can be found in the paper by Cabello-Aguilar (2022) <doi:10.1101/2022.01.03.474771>.
Authors:
ifCNVR_0.1.0.tar.gz
ifCNVR_0.1.0.zip(r-4.5)ifCNVR_0.1.0.zip(r-4.4)ifCNVR_0.1.0.zip(r-4.3)
ifCNVR_0.1.0.tgz(r-4.4-any)ifCNVR_0.1.0.tgz(r-4.3-any)
ifCNVR_0.1.0.tar.gz(r-4.5-noble)ifCNVR_0.1.0.tar.gz(r-4.4-noble)
ifCNVR_0.1.0.tgz(r-4.4-emscripten)ifCNVR_0.1.0.tgz(r-4.3-emscripten)
ifCNVR.pdf |ifCNVR.html✨
ifCNVR/json (API)
NEWS
| # Install 'ifCNVR' in R: |
| install.packages('ifCNVR', repos = c('https://simcab-chu.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/simcab-chu/ifcnvr/issues
- readsMatrixExample - Example dataset
Last updated 2 years agofrom:2d95adc34b. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 29 2024 |
| R-4.5-win | OK | Oct 29 2024 |
| R-4.5-linux | OK | Oct 29 2024 |
| R-4.4-win | OK | Oct 29 2024 |
| R-4.4-mac | OK | Oct 29 2024 |
| R-4.3-win | OK | Oct 29 2024 |
| R-4.3-mac | OK | Oct 29 2024 |
Exports:abSamplesabTargetscalculateRatiocalculateScoreCreateReadsMatrixgenerateReportnormalizeReadsscoring
Dependencies:base64encbslibcachemclidata.tabledigestevaluatefastmapfontawesomefsgluehighrhtmltoolsisotreejquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsRcpprlangrmarkdownsasstinytexxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| abSamples | abSamples |
| abTargets | abTargets |
| calculate Ratio | calculateRatio |
| calculate Score | calculateScore |
| CreateReadsMatrix | CreateReadsMatrix |
| generateReport | generateReport |
| normalizeReads | normalizeReads |
| Example dataset | readsMatrixExample |
| scoring | scoring |
