Package: ifCNVR 0.1.0

ifCNVR: Isolation-Forest Based 'CNV' Detection from 'NGS' Data

Automatically detects Copy Number Variations (CNV) from Next Generation Sequencing data using a machine learning algorithm, Isolation forest. More details about the method can be found in the paper by Cabello-Aguilar (2022) <doi:10.1101/2022.01.03.474771>.

Authors:Simon Cabello-Aguilar [aut, cre]

ifCNVR_0.1.0.tar.gz
ifCNVR_0.1.0.zip(r-4.7-any)ifCNVR_0.1.0.zip(r-4.6-any)ifCNVR_0.1.0.zip(r-4.5-any)
ifCNVR_0.1.0.tgz(r-4.6-any)ifCNVR_0.1.0.tgz(r-4.5-any)
ifCNVR_0.1.0.tar.gz(r-4.7-any)ifCNVR_0.1.0.tar.gz(r-4.6-any)
ifCNVR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ifCNVR/json (API)

# Install 'ifCNVR' in R:
install.packages('ifCNVR', repos = c('https://simcab-chu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/simcab-chu/ifcnvr/issues

Datasets:

On CRAN:

Conda:

3.30 score 4 stars 2 scripts 309 downloads 8 exports 29 dependencies

Last updated from:2d95adc34b. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK132
source / vignettesOK178
linux-releaseOK131
macos-releaseOK143
macos-oldrelOK150
windows-develOK58
windows-releaseOK68
windows-oldrelOK50
wasm-releaseOK116

Exports:abSamplesabTargetscalculateRatiocalculateScoreCreateReadsMatrixgenerateReportnormalizeReadsscoring

Dependencies:base64encbslibcachemclidata.tabledigestevaluatefastmapfontawesomefshighrhtmltoolsisotreejquerylibjsonliteknitrlifecyclememoisemimeR6rappdirsRcppRhpcBLASctlrlangrmarkdownsasstinytexxfunyaml

Readme and manuals

Help Manual

Help pageTopics
abSamplesabSamples
abTargetsabTargets
calculate RatiocalculateRatio
calculate ScorecalculateScore
CreateReadsMatrixCreateReadsMatrix
generateReportgenerateReport
normalizeReadsnormalizeReads
Example datasetreadsMatrixExample
scoringscoring